Mgr. Martin Maňák, Ph.D.

Martin Manak

Research Interests

Publications

Screenshots and Videos

The following screenshots were rendered by CAVER Analyst, using our own plugin for the computation and visualization of molecular surfaces and cavities. The computation is based on the additively weighted Voronoi diagram of atoms, which gives a convenient structure for any size of the spherical probe that defines the surface. The rendering uses GPU raycasting and geometry instancing.

Molecular surface colored by temp-factors.
Molecular surface colored by temperature factors, PDB ID: 2AFG
Molecular surface of a ribosomal sub-unit, small probe.
Small probe size
Molecular surface of a ribosomal sub-unit, medium probe.
Medium probe size
Molecular surface of a ribosomal sub-unit, large probe.
Large probe size
Molecular surface of a ribosomal sub-unit, PDB ID: 70S_RF2
Cavities inaccessible to the outer surface.
Inaccessible cavities, PDB ID: 1FUJ
Cavities in CAVER Analyst

Links